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defrag in two different file system

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Posted by: justamailman

Hi everyone
I have two HD 40 and 80. When I defragment , I use diskeeper. One HD is in NTFS system file and the other in FAT32. I make backups on a regular basis between C drive (XPhome in NTFS) and D drive (XP Pro in Fat32). Is it harder for my diskeeper that way or not because of the different file system. Also would it be faster to defrag only when I go on my Pro HD. Right now I am all doing it from C drive. Is it normal to share program like that or should I have program installed on each OS to run better? Lots of questions I know



 
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